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30b0485912
* Added support for meta in bwamem2/index * Added missing description of the input meta map (fasta file) * Made bwamem2/mem aware of the meta map the index carries * The output meta map needs to be same as the input bam file Don't merge it with the index's Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
11 lines
297 B
Text
11 lines
297 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BWAMEM2_INDEX } from '../../../../modules/bwamem2/index/main.nf'
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workflow test_bwamem2_index {
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fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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BWAMEM2_INDEX ( [ [id:'test'], fasta] )
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}
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