mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 02:58:17 +00:00
1f8f86b793
* takes gunzip out of fargene main.nf * update definition of input * options.args -> args Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
16 lines
471 B
Text
16 lines
471 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { GUNZIP } from '../../../modules/gunzip/main.nf'
|
|
include { FARGENE } from '../../../modules/fargene/main.nf'
|
|
|
|
workflow test_fargene {
|
|
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['bacteroides_fragilis']['illumina']['test1_contigs_fa_gz'], checkIfExists: true) ]
|
|
hmm_model = 'class_a'
|
|
|
|
GUNZIP ( input )
|
|
FARGENE ( GUNZIP.out.gunzip, hmm_model )
|
|
}
|