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nf-core_modules/tests/modules/fgbio/fastqtobam
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Matthias De Smet 36049bf544
Fgbio/fastqtobam (#1980) 
* fix samtools stats thread usage

* fix samtools stats thread usage (#1975)

* fix samtools stats thread usage

* fix checksums

* Fix/samtools flagstat (#1979)

* fix samtools stats thread usage

* flagstat: fix threads

* Update busco to v5.4.3 and tar small files (#1970)

* Update busco to v5.4.3 and tar small files

* Fix file contain strings

* Swap md5sums to contains for variable files

* Simplify and generalize module

* add test.yml

* Update modules/fgbio/fastqtobam/meta.yml

Co-authored-by: Moritz E. Beber <midnighter@posteo.net>

* add support + tests for cram output

* more tweaks

* update test.yml

* prettier

* try to fix tests

* fix tests

* prettier

* drop checksum for cram

Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
2022-09-05 11:57:55 +02:00
..
main.nf Fgbio/fastqtobam (#1980) 2022-09-05 11:57:55 +02:00
nextflow.config Fgbio/fastqtobam (#1980) 2022-09-05 11:57:55 +02:00
test.yml Fgbio/fastqtobam (#1980) 2022-09-05 11:57:55 +02:00