mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 02:58:17 +00:00
9d5ad1894b
* updated input for taxon * updated test_single_species * updated test file * run prettier on test.yml * updated label process_low * restored lable process_single Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
44 lines
952 B
Text
44 lines
952 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { GOAT_TAXONSEARCH } from '../../../../modules/goat/taxonsearch/main.nf'
|
|
|
|
//
|
|
// Test with genus name (Canis)
|
|
//
|
|
workflow test_goat_taxonsearch_single_species {
|
|
|
|
input = [
|
|
[ id:'test_single_species' ], // meta map
|
|
taxon = 'Meles meles',
|
|
[]
|
|
]
|
|
GOAT_TAXONSEARCH ( input )
|
|
}
|
|
|
|
//
|
|
// Test with genus (Drosophila, fruit flies) using NCBI taxonomy ID
|
|
//
|
|
workflow test_goat_taxonsearch_genus_id {
|
|
|
|
input = [
|
|
[ id:'test_genus_id' ], // meta map
|
|
taxon = '7215',
|
|
[]
|
|
]
|
|
GOAT_TAXONSEARCH ( input )
|
|
}
|
|
|
|
//
|
|
// Test with multiple species from a taxa file
|
|
//
|
|
workflow test_goat_taxonsearch_species {
|
|
|
|
input = [
|
|
[ id:'test_species' ], // meta map
|
|
taxon = '',
|
|
file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/goat_taxonsearch/taxonomy_ids.txt', checkIfExists: true)
|
|
]
|
|
GOAT_TAXONSEARCH ( input )
|
|
}
|