nf-core_modules/tests/modules/mosdepth/test.yml

- name: mosdepth test_mosdepth
  command: nextflow run ./tests/modules/mosdepth -entry test_mosdepth -c ./tests/config/nextflow.config  -c ./tests/modules/mosdepth/nextflow.config
  tags:
    - mosdepth
  files:
    - path: output/mosdepth/test.mosdepth.global.dist.txt
      md5sum: e82e90c7d508a135b5a8a7cd6933452e
    - path: output/mosdepth/test.mosdepth.summary.txt
      md5sum: 4f0d231060cbde4efdd673863bd2fb59
    - path: output/mosdepth/test.per-base.bed.gz
      md5sum: bc1df47d46f818fee5275975925d769a
    - path: output/mosdepth/test.per-base.bed.gz.csi
      md5sum: 9e649ac749ff6c6073bef5ab63e8aaa4

- name: mosdepth test_mosdepth_bed
  command: nextflow run ./tests/modules/mosdepth -entry test_mosdepth_bed -c ./tests/config/nextflow.config  -c ./tests/modules/mosdepth/nextflow.config
  tags:
    - mosdepth
  files:
    - path: output/mosdepth/test.mosdepth.global.dist.txt
      md5sum: e82e90c7d508a135b5a8a7cd6933452e
    - path: output/mosdepth/test.mosdepth.region.dist.txt
      md5sum: e82e90c7d508a135b5a8a7cd6933452e
    - path: output/mosdepth/test.mosdepth.summary.txt
      md5sum: 96c037f769974b904beb53edc4f56d82
    - path: output/mosdepth/test.per-base.bed.gz
      md5sum: bc1df47d46f818fee5275975925d769a
    - path: output/mosdepth/test.per-base.bed.gz.csi
      md5sum: 9e649ac749ff6c6073bef5ab63e8aaa4
    - path: output/mosdepth/test.regions.bed.gz
      md5sum: 5d398caf7171ec4406278e2add3009ae
    - path: output/mosdepth/test.regions.bed.gz.csi
      md5sum: 47669cfe41f3e222e74d81e1b1be191f

- name: mosdepth test_mosdepth_cram
  command: nextflow run ./tests/modules/mosdepth -entry test_mosdepth_cram -c ./tests/config/nextflow.config  -c ./tests/modules/mosdepth/nextflow.config
  tags:
    - mosdepth
  files:
    - path: output/mosdepth/test.mosdepth.global.dist.txt
      md5sum: e82e90c7d508a135b5a8a7cd6933452e
    - path: output/mosdepth/test.mosdepth.summary.txt
      md5sum: 4f0d231060cbde4efdd673863bd2fb59
    - path: output/mosdepth/test.per-base.bed.gz
      md5sum: bc1df47d46f818fee5275975925d769a
    - path: output/mosdepth/test.per-base.bed.gz.csi
      md5sum: 9e649ac749ff6c6073bef5ab63e8aaa4

- name: mosdepth test_mosdepth_cram_bed
  command: nextflow run ./tests/modules/mosdepth -entry test_mosdepth_cram_bed -c ./tests/config/nextflow.config  -c ./tests/modules/mosdepth/nextflow.config
  tags:
    - mosdepth
  files:
    - path: output/mosdepth/test.mosdepth.global.dist.txt
      md5sum: e82e90c7d508a135b5a8a7cd6933452e
    - path: output/mosdepth/test.mosdepth.region.dist.txt
      md5sum: e82e90c7d508a135b5a8a7cd6933452e
    - path: output/mosdepth/test.mosdepth.summary.txt
      md5sum: 96c037f769974b904beb53edc4f56d82
    - path: output/mosdepth/test.per-base.bed.gz
      md5sum: bc1df47d46f818fee5275975925d769a
    - path: output/mosdepth/test.per-base.bed.gz.csi
      md5sum: 9e649ac749ff6c6073bef5ab63e8aaa4
    - path: output/mosdepth/test.regions.bed.gz
      md5sum: 5d398caf7171ec4406278e2add3009ae
    - path: output/mosdepth/test.regions.bed.gz.csi
      md5sum: 47669cfe41f3e222e74d81e1b1be191f

- name: mosdepth test_mosdepth_window
  command: nextflow run ./tests/modules/mosdepth -entry test_mosdepth_window -c ./tests/config/nextflow.config  -c ./tests/modules/mosdepth/nextflow.config
  tags:
    - mosdepth
  files:
    - path: output/mosdepth/test.mosdepth.global.dist.txt
      md5sum: e82e90c7d508a135b5a8a7cd6933452e
    - path: output/mosdepth/test.mosdepth.region.dist.txt
      md5sum: 39e0e707ec32feb5176fd20a95f1f468
    - path: output/mosdepth/test.mosdepth.summary.txt
      md5sum: 96c037f769974b904beb53edc4f56d82
    - path: output/mosdepth/test.per-base.bed.gz
      md5sum: bc1df47d46f818fee5275975925d769a
    - path: output/mosdepth/test.per-base.bed.gz.csi
      md5sum: 9e649ac749ff6c6073bef5ab63e8aaa4
    - path: output/mosdepth/test.regions.bed.gz
      md5sum: f02e2cb49cc050e13d76942d6960827a
    - path: output/mosdepth/test.regions.bed.gz.csi
      md5sum: 257d67678136963d9dd904330079609d

- name: mosdepth test_mosdepth_quantized
  command: nextflow run ./tests/modules/mosdepth -entry test_mosdepth_quantized -c ./tests/config/nextflow.config  -c ./tests/modules/mosdepth/nextflow.config
  tags:
    - mosdepth
  files:
    - path: output/mosdepth/test.mosdepth.global.dist.txt
      md5sum: e82e90c7d508a135b5a8a7cd6933452e
    - path: output/mosdepth/test.mosdepth.summary.txt
      md5sum: 4f0d231060cbde4efdd673863bd2fb59
    - path: output/mosdepth/test.per-base.bed.gz
      md5sum: bc1df47d46f818fee5275975925d769a
    - path: output/mosdepth/test.per-base.bed.gz.csi
      md5sum: 9e649ac749ff6c6073bef5ab63e8aaa4
    - path: output/mosdepth/test.quantized.bed.gz
      md5sum: 3e434a8bafcf59a67841ae3d4d752838
    - path: output/mosdepth/test.quantized.bed.gz.csi
      md5sum: be9617f551f19a33923f1e886eaefb93

- name: mosdepth test_mosdepth_thresholds
  command: nextflow run ./tests/modules/mosdepth -entry test_mosdepth_thresholds -c ./tests/config/nextflow.config  -c ./tests/modules/mosdepth/nextflow.config
  tags:
    - mosdepth
  files:
    - path: output/mosdepth/test.mosdepth.global.dist.txt
      md5sum: e82e90c7d508a135b5a8a7cd6933452e
    - path: output/mosdepth/test.mosdepth.region.dist.txt
      md5sum: e82e90c7d508a135b5a8a7cd6933452e
    - path: output/mosdepth/test.mosdepth.summary.txt
      md5sum: 96c037f769974b904beb53edc4f56d82
    - path: output/mosdepth/test.per-base.bed.gz
      md5sum: bc1df47d46f818fee5275975925d769a
    - path: output/mosdepth/test.per-base.bed.gz.csi
      md5sum: 9e649ac749ff6c6073bef5ab63e8aaa4
    - path: output/mosdepth/test.regions.bed.gz
      md5sum: 5d398caf7171ec4406278e2add3009ae
    - path: output/mosdepth/test.regions.bed.gz.csi
      md5sum: 47669cfe41f3e222e74d81e1b1be191f
    - path: output/mosdepth/test.thresholds.bed.gz
      md5sum: 13101e326eea3cbfa1d569b69f494f4c
    - path: output/mosdepth/test.thresholds.bed.gz.csi
      md5sum: 912055ee9452229439df6fae95644196

- name: mosdepth test_mosdepth_fail
  command: nextflow run ./tests/modules/mosdepth -entry test_mosdepth_fail -c ./tests/config/nextflow.config  -c ./tests/modules/mosdepth/nextflow.config
  tags:
    - mosdepth
  exit_code: 1