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13 lines
669 B
YAML
13 lines
669 B
YAML
- name: plasmidfinder test_plasmidfinder
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command: nextflow run ./tests/modules/plasmidfinder -entry test_plasmidfinder -c ./tests/config/nextflow.config -c ./tests/modules/plasmidfinder/nextflow.config
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tags:
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- plasmidfinder
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files:
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- path: output/plasmidfinder/test-hit_in_genome_seq.fsa
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- path: output/plasmidfinder/test-plasmid_seqs.fsa
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- path: output/plasmidfinder/test.json
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contains: ["plasmidfinder", "filename", "results", "Rep_trans"]
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- path: output/plasmidfinder/test.tsv
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contains: ["Database", "Accession", "Query"]
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- path: output/plasmidfinder/test.txt
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contains: ["plasmidfinder", "Results", "Contig", "found"]
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