mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 02:58:17 +00:00
39 lines
1.9 KiB
YAML
39 lines
1.9 KiB
YAML
- name: roary test_roary
|
|
command: nextflow run ./tests/modules/roary -entry test_roary -c ./tests/config/nextflow.config -c ./tests/modules/roary/nextflow.config
|
|
tags:
|
|
- roary
|
|
files:
|
|
- path: output/roary/results/accessory.header.embl
|
|
contains: ["ID Genome standard; DNA; PRO; 1234 BP."]
|
|
- path: output/roary/results/accessory.tab
|
|
contains: ["FT"]
|
|
- path: output/roary/results/accessory_binary_genes.fa
|
|
md5sum: d4191cf748dd8016ad877857a034bef3
|
|
- path: output/roary/results/accessory_binary_genes.fa.newick
|
|
md5sum: d4a2a64e781263ca1b9b3a4bc9d3a6ea
|
|
- path: output/roary/results/accessory_graph.dot
|
|
contains: ["/* list of nodes */"]
|
|
- path: output/roary/results/blast_identity_frequency.Rtab
|
|
md5sum: 829baa25c3fad94b1af207265452a692
|
|
- path: output/roary/results/clustered_proteins
|
|
contains: ["JKHLNHAL_00087"]
|
|
- path: output/roary/results/core_accessory.header.embl
|
|
contains: ["ID Genome standard; DNA; PRO; 1234 BP."]
|
|
- path: output/roary/results/core_accessory.tab
|
|
contains: ['FT /taxa="test1 test2 test3"']
|
|
- path: output/roary/results/core_accessory_graph.dot
|
|
contains: ["/* list of nodes */"]
|
|
- path: output/roary/results/gene_presence_absence.Rtab
|
|
contains: ["Gene"]
|
|
- path: output/roary/results/gene_presence_absence.csv
|
|
contains: ['"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences"']
|
|
- path: output/roary/results/number_of_conserved_genes.Rtab
|
|
contains: ["2"]
|
|
- path: output/roary/results/number_of_genes_in_pan_genome.Rtab
|
|
contains: ["2"]
|
|
- path: output/roary/results/number_of_new_genes.Rtab
|
|
contains: ["2"]
|
|
- path: output/roary/results/number_of_unique_genes.Rtab
|
|
contains: ["2"]
|
|
- path: output/roary/results/summary_statistics.txt
|
|
md5sum: 3921b5445df6a7ed59408119b8860a58
|