nf-core_modules/tests/subworkflows/nf-core
Harshil Patel b3e322064e
[POC] Get subworkflows working again - bam_stats_samtools (#2097)
* [POC] Get subworkflows working again - bam_stats_samtools

* Comment out aliased anchors

* Add explicit anchor to pytest_modules.yml

* test(subworkflows): Remove anchors

There are two options to get the tests to trigger:

1. Add the module anchors to the subworkflows (less things to update and maintain because we only have to update the module triggers)

2. Add the tags to the pytest workflow spec.

This is option 2.

Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com>
2022-09-28 19:20:20 +01:00
..
align_bowtie2 Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
annotation fix path to script 2022-05-07 15:22:52 +02:00
bam_qc_picard add fasta index 2022-04-28 13:52:03 +02:00
bam_sort_samtools Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
bam_stats_samtools [POC] Get subworkflows working again - bam_stats_samtools (#2097) 2022-09-28 19:20:20 +01:00
fgbio_create_umi_consensus Added UMI sub-workflow (#1098) 2021-12-09 11:16:40 +01:00
gatk_create_som_pon Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
gatk_tumor_normal_somatic_variant_calling Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
gatk_tumor_only_somatic_variant_calling Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
homer/groseq feat(homer): Add groseq subworkflow (#1492) 2022-04-04 18:21:37 +00:00
srafastq refactor: rename and update subworkflow 2022-05-11 19:24:16 +02:00