James A. Fellows Yates 03de60e6fa Add CHECKM/QA (#2137) ... * Bump checkM version and add support for pre-defined database * Add markfile output to checkm/lineagewf and add checkm/qa * Remove unnecessary BAM from tests * Fix channels to ensure single meta * Blah * Use secondary name evwyhere * Remove second incovcatiojn * Don't run module directrly for join * And for the other test * Correct module name * Fix name again * Try and fix out_format 9 not being picked up * Contains to matches to allow regex * Fix tests (finally) * Fix verisoning * [automated] Fix linting with Prettier * Update modules/checkm/qa/main.nf Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com> Co-authored-by: nf-core-bot <core@nf-co.re> Co-authored-by: nvnieuwk <101190534+nvnieuwk@users.noreply.github.com>		2022-09-30 15:50:47 +02:00
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lineagewf	Add CHECKM/QA (#2137)	2022-09-30 15:50:47 +02:00
qa	Add CHECKM/QA (#2137)	2022-09-30 15:50:47 +02:00