mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 21:53:10 +00:00
1016c9bd1a
* Initial commit of seqtk/seq module files * pytest.yml * updated module and tests code, need to finish modules/main.nf * Initial commit of seqtk/seq module files * pytest.yml * updated module and tests code, need to finish modules/main.nf * Adding code and configs for seqtk/seq module * Re-tested module following minor code update * removed trailing whitespace errors * Changed variable name to following reviewer suggestions Co-authored-by: Sateesh <33637490+sateeshperi@users.noreply.github.com>
42 lines
1.2 KiB
YAML
42 lines
1.2 KiB
YAML
name: seqtk_seq
|
|
description: Common transformation operations on FASTA or FASTQ files.
|
|
keywords:
|
|
- seq
|
|
tools:
|
|
- seqtk:
|
|
description: Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. The seqtk seq command enables common transformation operations on FASTA or FASTQ files.
|
|
homepage: https://github.com/lh3/seqtk
|
|
documentation: https://docs.csc.fi/apps/seqtk/
|
|
tool_dev_url: https://github.com/lh3/seqtk
|
|
licence: ['MIT']
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- sequences:
|
|
type: file
|
|
description: A FASTQ or FASTA file
|
|
pattern: "*.{fastq.gz, fastq, fq, fq.gz, fasta, fastq.gz, fa, fa.gz, fas, fas.gz, fna, fna.gz}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- sequences:
|
|
type: file
|
|
description: FASTQ/FASTA file containing renamed sequences
|
|
pattern: "*.{fastq.gz, fasta.gz}"
|
|
|
|
authors:
|
|
- "@hseabolt"
|
|
- "@mjcipriano"
|
|
- "@sateeshperi"
|