nf-core_modules/tests/modules/samblaster/test.yml at samtools - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00

Francesco L 02892ef654

New module: Samblaster (#954 )

* add base code from samblaster

* added test yml

* fixing versions files, should this be the cause of online lint failures

* removed tmp files that shouldn't be there

* fixing output file name - 1

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* fixing output file name - 2

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* fixing output file name - 3

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* fixing output file name - 4

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* fixing output file name - 5

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* fixing output file name - 6

* fixed indent

* fixed input name and updated test.yml file with new name

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-11-04 18:18:56 +01:00

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 - name: samblaster test_samblaster
   command: nextflow run tests/modules/samblaster -entry test_samblaster -c tests/config/nextflow.config
   tags:
     - samblaster
   files:
     - path: output/samblaster/test.processed.bam
       md5sum: 950f23d85f75be1cf872f45c0144bdf4