nf-core_modules/tests/modules/snpeff/test.yml at samtools - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00

Harshil Patel e937c7950a

Rename software/ directory to modules/ to re-organise module structure (#567 )

* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml

2021-07-07 10:10:18 +01:00

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 - name: snpeff test_snpeff
   command: nextflow run tests/modules/snpeff -entry test_snpeff -c tests/config/nextflow.config
   tags:
     - snpeff
   files:
     - path: output/snpeff/test.ann.vcf
       md5sum: 42db84cb186e33c6992f9306627201ac
     - path: output/snpeff/test.csv