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* Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * feat: add megahit module, currently decompressed output * Update main.nf * Update tests/modules/megahit/test.yml Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * feat: compress all outputs, remove md5sums due to gz stochasicity * fix: wrong conda channel for pigz * fix: broken singleend tests and update meta.yml * Missed one * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fix: pigz formatting * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Apply suggestions from code review * Added, just need to finish tests once we have bacterial data * Add prelim test data * Fix version reporting * Add tests based on proposed test-dataset * Finalise new testdata * Fix md5sum issue by removing it... * Update main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>
15 lines
598 B
YAML
15 lines
598 B
YAML
- name: maxbin2
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command: nextflow run ./tests/modules/maxbin2 -entry test_maxbin2 -c tests/config/nextflow.config
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tags:
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- maxbin2
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files:
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- path: output/maxbin2/test1.001.fasta.gz
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- path: output/maxbin2/test1.002.fasta.gz
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- path: output/maxbin2/test1.log.gz
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- path: output/maxbin2/test1.marker.gz
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- path: output/maxbin2/test1.marker_of_each_bin.tar.gz
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- path: output/maxbin2/test1.noclass.gz
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- path: output/maxbin2/test1.summary
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contains:
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- "Bin name\tAbundance\tCompleteness\tGenome size\tGC content"
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- path: output/maxbin2/test1.tooshort.gz
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