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02892ef654
* add base code from samblaster * added test yml * fixing versions files, should this be the cause of online lint failures * removed tmp files that shouldn't be there * fixing output file name - 1 Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fixing output file name - 2 Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fixing output file name - 3 Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fixing output file name - 4 Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fixing output file name - 5 Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * fixing output file name - 6 * fixed indent * fixed input name and updated test.yml file with new name Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
13 lines
426 B
Text
13 lines
426 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SAMBLASTER } from '../../../modules/samblaster/main.nf' addParams( options: [args: "-M --addMateTags", suffix:'.processed'] )
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workflow test_samblaster {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_umi_unsorted_bam'], checkIfExists: true) ]
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SAMBLASTER ( input )
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}
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