| .. |
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abacas
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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adapterremoval
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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agrvate
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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allelecounter
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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amps
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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arriba
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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artic
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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assemblyscan
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add new assembly scan module (#971)
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2021-10-29 10:01:23 +02:00 |
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bamaligncleaner
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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bamtools/split
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Update module: bamtools/split (#885)
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2021-10-23 19:39:27 +01:00 |
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bandage/image
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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bbmap
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Fix bug with SortMeRna not working on a single db file (#788)
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2021-10-04 12:37:21 +01:00 |
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bcftools
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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bedtools
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Bedtools sort add extension choice input (#984)
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2021-10-29 13:22:17 +01:00 |
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bismark
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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blast
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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bowtie
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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bowtie2
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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bwa
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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bwamem2
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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bwameth
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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cat
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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cellranger
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new module cellranger mkref (#896)
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2021-10-28 13:33:57 +02:00 |
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checkm/lineagewf
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New module: checkm/lineagewf (#899)
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2021-10-26 21:54:10 +01:00 |
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chromap
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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cnvkit
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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cooler
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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csvtk/concat
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patch output extension in csvtk/concat (#797)
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2021-10-05 22:15:08 +01:00 |
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custom/dumpsoftwareversions
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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cutadapt
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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damageprofiler
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fix: reduce number of required input files for damage profiler (#612)
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2021-10-20 10:02:30 +02:00 |
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dedup
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Add module: dedup (#907)
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2021-10-28 12:10:21 +02:00 |
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deeptools
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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delly/call
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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diamond
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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dragonflye
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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dshbio
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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ensemblvep
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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expansionhunter
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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fastani
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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fastp
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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fastqc
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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fasttree
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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fgbio
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Fgbio group reads by umi (#952)
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2021-10-29 14:00:54 +02:00 |
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filtlong
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add filtlong (#919)
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2021-10-27 17:00:11 +02:00 |
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flash
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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freebayes
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New module: freebayes (#818)
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2021-10-20 15:19:31 +02:00 |
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gatk4
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Update to allow cram + update needed to use the gatk4 modules in sarek (#976)
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2021-10-29 13:01:05 +02:00 |
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genmap
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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genrich
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New module: genrich (#877)
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2021-10-22 12:22:02 +02:00 |
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gffread
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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glnexus
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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graphmap2
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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gstama
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New module: gstama/merge (#813)
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2021-10-23 19:00:39 +01:00 |
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gtdbtk/classifywf
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Add gtdbtk/classifywf module (#765)
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2021-10-05 21:23:01 +01:00 |
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gubbins
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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gunzip
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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hicap
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add hicap module (#772)
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2021-10-05 21:42:09 +01:00 |
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hifiasm
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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hisat2
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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hmmer/hmmalign
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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homer
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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iqtree
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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ismapper
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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isoseq3
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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ivar
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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jupyternotebook
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Notebook modules (#617)
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2021-10-24 20:51:56 +02:00 |
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kallisto/index
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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kallistobustools
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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khmer/normalizebymedian
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Khmer normalizebymedian (#985)
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2021-10-29 13:23:34 +02:00 |
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kleborate
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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kraken2/kraken2
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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last
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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lib
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Bulk update modules to use versions.yml (#739)
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2021-09-27 09:41:24 +01:00 |
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lima
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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lofreq
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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macs2/callpeak
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Remove def software lines and emit versions channel as plural (#780)
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2021-10-01 14:04:56 +01:00 |
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malt
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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maltextract
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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manta
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Update to allow cram + update needed to use the gatk4 modules in sarek (#976)
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2021-10-29 13:01:05 +02:00 |
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mash/sketch
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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mashtree
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add mashtree module (#767)
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2021-10-05 21:27:30 +01:00 |
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maxbin2
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New module: maxbin2 (#895)
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2021-10-26 22:07:33 +01:00 |
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megahit
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Add MEGAHIT (#810)
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2021-10-12 16:06:06 +01:00 |
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metaphlan3
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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methyldackel
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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minia
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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minimap2
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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mlst
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added classic mlst module (#742)
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2021-10-05 20:49:46 +01:00 |
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mosdepth
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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msisensor
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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multiqc
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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muscle
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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nanolyse
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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nanoplot
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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nextclade
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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optitype
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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pairix
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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pairtools
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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pangolin
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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paraclu
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add paraclu (#909)
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2021-10-27 15:48:49 +02:00 |
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pbbam/pbmerge
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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pbccs
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Update of pbccs (#835)
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2021-10-23 19:09:41 +01:00 |
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phantompeakqualtools
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Remove def software lines and emit versions channel as plural (#780)
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2021-10-01 14:04:56 +01:00 |
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picard
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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pirate
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add pirate module (#777)
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2021-10-05 22:28:25 +01:00 |
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plasmidid
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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plink/vcf
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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porechop
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add porechop module (#914)
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2021-10-28 13:21:36 +02:00 |
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preseq/lcextrap
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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prodigal
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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prokka
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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pycoqc
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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pydamage
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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qcat
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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qualimap
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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quast
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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rapidnj
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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rasusa
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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raxmlng
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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rmarkdownnotebook
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Notebook modules (#617)
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2021-10-24 20:51:56 +02:00 |
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roary
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add roary module (#776)
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2021-10-05 22:08:47 +01:00 |
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rsem
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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rseqc
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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salmon
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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samtools
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Update to allow cram + update needed to use the gatk4 modules in sarek (#976)
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2021-10-29 13:01:05 +02:00 |
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seacr/callpeak
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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seqkit/split2
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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seqtk
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New module seqtk/mergepe (#951)
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2021-10-28 16:53:33 +02:00 |
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sequenzautils
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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seqwish/induce
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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shovill
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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snpdists
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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snpeff
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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snpsites
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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sortmerna
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Fix sortmerna docker container pointer (#791)
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2021-10-05 12:05:37 +02:00 |
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spaceranger
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build(spaceranger): Add initial dockerfile
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2021-11-05 11:18:32 -05:00 |
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spades
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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spatyper
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add spatyper module (#784)
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2021-10-05 22:21:35 +01:00 |
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sratools
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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staphopiasccmec
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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star
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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strelka
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Update to allow cram + update needed to use the gatk4 modules in sarek (#976)
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2021-10-29 13:01:05 +02:00 |
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stringtie
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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subread/featurecounts
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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tabix
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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tiddit
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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trimgalore
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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ucsc
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New module: ucsc/liftover (#868)
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2021-10-21 18:04:15 +02:00 |
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umitools
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added meta.yml for umitools (#860)
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2021-10-23 17:30:10 +01:00 |
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unicycler
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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untar
|
Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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unzip
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Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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variantbam
|
Backfill software licenses meta (#876)
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2021-10-22 15:39:54 -07:00 |
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vcftools
|
Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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yara
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
