nf-core_modules/tests/modules/pycoqc/test.yml at spaceranger - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00

Harshil Patel e937c7950a

Rename software/ directory to modules/ to re-organise module structure (#567 )

* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml

2021-07-07 10:10:18 +01:00

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 - name: pycoqc
   command: nextflow run ./tests/modules/pycoqc -entry test_pycoqc -c tests/config/nextflow.config
   tags:
     - pycoqc
   files:
     - path: output/pycoqc/pycoqc.json
       contains:
         - '"reads_number": 100,'
         - '"bases_number": 1160,'
         - '"N50": 12,'
     - path: output/pycoqc/pycoqc.html