nf-core_modules/tests
Adam Talbot 009f7c691c
Add module: gatk4/leftalignandtrimvariants (#1808)
* Added: gatk4/leftalignandtrimvariants

Additions:
 - GATK4/LeftAlignAndTrimVariants module
 - Use sars-ncov2 test data as this normalises a larger INDEL correctly.

Fixes #1801

* fixup: Added index to output spec

* fixup: Pattern of tbi output corrected to 'tbi'

* gatk4/leftalignandtrimvariants: Added intervals

Changes:
 - gatk4/leftalignandtrimvariants now supports optional interval as BED
 file
 - Tests added with and without interval. Not test BED file excludes all
 variants so no variants are actually normalised.

Fixes #1801

* fixup: leftalignandtrimvariants vcf->tbi fix

* fixup: gatk4/leftalignandtrimvariants Intervals added to meta.yml
2022-06-28 10:44:08 +02:00
..
config Add module: gatk4/leftalignandtrimvariants (#1808) 2022-06-28 10:44:08 +02:00
modules Add module: gatk4/leftalignandtrimvariants (#1808) 2022-06-28 10:44:08 +02:00
subworkflows/nf-core refactor: rename and update subworkflow 2022-05-11 19:24:16 +02:00
test_versions_yml.py Update Git SHA messagre 2022-06-10 11:01:40 +00:00