nf-core_modules/modules/last/mafswap/meta.yml
Gregor Sturm 906577873b
Bulk update modules to use versions.yml (#739)
* New functions.nf

* Convert code to create versions.yml

* Update meta.yml

* update output channel

* Fix more meta.yml

* Manually update remaining modules

* remove superflous echo

* Fix misformatted meta.yml files

* Fix yaml, was list instead of dict

* fix version for bcftools

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-27 09:41:24 +01:00

39 lines
1,003 B
YAML

name: last_mafswap
description: Reorder alignments in a MAF file
keywords:
- LAST
- reorder
- alignment
- MAF
tools:
- last:
description: LAST finds & aligns related regions of sequences.
homepage: https://gitlab.com/mcfrith/last
documentation: https://gitlab.com/mcfrith/last/-/blob/main/doc/
tool_dev_url: https://gitlab.com/mcfrith/last
doi: ""
licence: ['GPL-3.0-or-later']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- maf:
type: file
description: Multiple Aligment Format (MAF) file, optionally compressed with gzip
pattern: "*.{maf.gz,maf}"
output:
- maf:
type: file
description: Multiple Aligment Format (MAF) file, compressed with gzip
pattern: "*.{maf.gz}"
- version:
type: file
description: File containing software version
pattern: "versions.yml"
authors:
- "@charles-plessy"