nf-core_modules/software/seqtk
Svyatoslav Sidorov 01dc6a289d
Feat seqtk update (#503)
* hifiasm copied from fastqc

* hifiasm tests init from fastqc

* meta.yml init; test.yml and main.nf for printing version

* Add hifiasm version printing

* Removed spaced on an empty line

* Reverted hifiasm from main

* hifiasm copied from fastqc

* hifiasm tests init from fastqc

* meta.yml init; test.yml and main.nf for printing version

* Add hifiasm version printing

* Removed spaced on an empty line

* Reverted hifiasm from main

* Added seqtk/subseq and checking for seed in seqtk/sample

* Separate authors in software/seqtk/sample/meta.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Align commans in output channesl software/seqtk/subseq/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Define prefix in software/seqtk/subseq/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Use prefix in output file name software/seqtk/subseq/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Define suffix in options in tests/software/seqtk/subseq/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Change output file name in tests/software/seqtk/subseq/test.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Remove a to-do point from tests/software/seqtk/subseq/test.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Added --no-name into gzip commands

* Update samtools from 1.10 to 1.12 (#530)

* feat: remove social preview image to use GitHub OpenGraph

* feat: update samtools from 1.10 to 1.12

* fix: CI tests

* fix: add meta.yml file for samtools/merge

* Update software/samtools/merge/meta.yml

Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>

* Update software/samtools/merge/meta.yml

Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>

* hifiasm copied from fastqc

* hifiasm tests init from fastqc

* meta.yml init; test.yml and main.nf for printing version

* Add hifiasm version printing

* Removed spaced on an empty line

* Reverted hifiasm from main

* Added seqtk/subseq and checking for seed in seqtk/sample

* hifiasm copied from fastqc

* hifiasm tests init from fastqc

* meta.yml init; test.yml and main.nf for printing version

* Add hifiasm version printing

* Removed spaced on an empty line

* Reverted hifiasm from main

* Separate authors in software/seqtk/sample/meta.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Align commans in output channesl software/seqtk/subseq/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Define prefix in software/seqtk/subseq/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Use prefix in output file name software/seqtk/subseq/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Define suffix in options in tests/software/seqtk/subseq/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Change output file name in tests/software/seqtk/subseq/test.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Remove a to-do point from tests/software/seqtk/subseq/test.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Added --no-name into gzip commands

* Replaced functions.nf in seqtk/subseq

* Refreshed tests for sample and subseq

* Corrected paired-end test and YAML description for sample

Co-authored-by: Sviatoslav Sidorov <sviatoslav.sidorov@crick.ac.uk>
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
2021-06-14 12:23:15 +01:00
..
sample Feat seqtk update (#503) 2021-06-14 12:23:15 +01:00
subseq Feat seqtk update (#503) 2021-06-14 12:23:15 +01:00