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https://github.com/MillironX/nf-core_modules.git
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a3684d9594
* ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
36 lines
2.2 KiB
YAML
36 lines
2.2 KiB
YAML
- name: Run bismark_genomepreparation test workflow
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command: nextflow run ./tests/software/bismark/genomepreparation -entry test_bismark_genomepreparation -c tests/config/nextflow.config
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tags:
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- bismark
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- bismark/genomepreparation
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files:
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- path: ./output/bismark/BismarkIndex/genome.fasta
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md5sum: 6e9fe4042a72f2345f644f239272b7e6
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/genome_mfa.CT_conversion.fa
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md5sum: 903b9f357eea4a5f36e21e78e0fe1dfa
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/BS_CT.4.bt2
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md5sum: 6c4f549575e5882ff3a97ae10ae2e7be
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/BS_CT.1.bt2
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md5sum: 10a8854e5eeb95629f46d24b0d8da70c
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/BS_CT.3.bt2
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md5sum: 4ed93abba181d8dfab2e303e33114777
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/BS_CT.2.bt2
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md5sum: bc5d407e6fce3e1cdb4b23ab2a20f707
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/BS_CT.rev.2.bt2
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md5sum: 48bf400de85cd7324fbf6bf38fe2dc95
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/CT_conversion/BS_CT.rev.1.bt2
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md5sum: d37d586b41b6a36efb25839961d242cb
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/BS_GA.rev.1.bt2
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md5sum: 17f51e65f44477962226a83b369b2bc4
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/BS_GA.rev.2.bt2
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md5sum: d36044c5dfe37af0411f60d446585bc6
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/genome_mfa.GA_conversion.fa
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md5sum: e529375ec2039112161465b5169fcd59
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/BS_GA.4.bt2
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md5sum: b1e855685ed634daa7df8e180c9b2fc4
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/BS_GA.1.bt2
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md5sum: a6fa4068ed10872568f32568c66cb600
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/BS_GA.2.bt2
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md5sum: fc5b634e2f5137801e3801d62ad05f74
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- path: ./output/bismark/BismarkIndex/Bisulfite_Genome/GA_conversion/BS_GA.3.bt2
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md5sum: 4ed93abba181d8dfab2e303e33114777
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