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ec6ebe086f
Added the necessary chrom sizes input and changed test file to directory (as specified in nfcore).
19 lines
471 B
Text
19 lines
471 B
Text
#!/usr/bin/env nextflow
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nextflow.preview.dsl = 2
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params.out_dir = "test_output"
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params.upstream = 1
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params.downstream = 10
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include BEDTOOLS_SLOPEREFSEQ from '../main.nf' params(params)
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// Define input channels
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ch_input_1 = Channel.fromPath('./tests/data/bed/A.bed')
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ch_input_2 = Channel.fromPath('./tests/data/bed/genome.sizes')
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def additional_params_map = [:]
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// Run the workflow
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workflow {
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BEDTOOLS_SLOPEREFSEQ(ch_input_1, ch_input_2, additional_params_map)
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}
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