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7b3315591a
* Remove def software line * Replace version with versions in emit statement * Fix default software names
45 lines
1.3 KiB
Text
45 lines
1.3 KiB
Text
// Import generic module functions
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include { initOptions; saveFiles; getSoftwareName; getProcessName } from './functions'
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params.options = [:]
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options = initOptions(params.options)
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def VERSION = '377' // No version information printed
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process UCSC_WIGTOBIGWIG {
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tag '$wig'
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label 'process_medium'
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publishDir "${params.outdir}",
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mode: params.publish_dir_mode,
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saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:[:], publish_by_meta:[]) }
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conda (params.enable_conda ? "bioconda::ucsc-wigtobigwig=377" : null)
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if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
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container "https://depot.galaxyproject.org/singularity/ucsc-wigtobigwig:377--h0b8a92a_2"
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} else {
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container "quay.io/biocontainers/ucsc-wigtobigwig:377--h0b8a92a_2"
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}
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input:
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path wig
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path chromsizes
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output:
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path "*.bw" , emit: bw
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path "versions.yml" , emit: versions
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script:
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"""
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wigToBigWig \\
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$options.args \\
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$wig \\
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$chromsizes \\
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${wig.getSimpleName()}.bw
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cat <<-END_VERSIONS > versions.yml
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${getProcessName(task.process)}:
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${getSoftwareName(task.process)}: \$(echo "$VERSION")
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END_VERSIONS
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"""
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}
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