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26 lines
669 B
Bash
Executable file
26 lines
669 B
Bash
Executable file
#!/usr/bin/env bash
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set -euo pipefail
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# Build and push all containers
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build_push() {
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GENOME=$1
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SNPEFF_CACHE_VERSION=$2
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SNPEFF_VERSION=$3
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docker build \
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. \
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-t nfcore/snpeff:${SNPEFF_VERSION}.${GENOME} \
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--build-arg GENOME=${GENOME} \
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--build-arg SNPEFF_CACHE_VERSION=${SNPEFF_CACHE_VERSION} \
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--build-arg SNPEFF_VERSION=${SNPEFF_VERSION}
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docker push nfcore/snpeff:${SNPEFF_VERSION}.${GENOME}
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}
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build_push "GRCh37" "87" "5.1"
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build_push "GRCh38" "105" "5.1"
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build_push "GRCm38" "99" "5.1"
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build_push "GRCm39" "105" "5.1"
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build_push "CanFam3.1" "99" "5.1"
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build_push "WBcel235" "105" "5.1"
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