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043a7d1e3c
* remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
37 lines
1.4 KiB
YAML
37 lines
1.4 KiB
YAML
- name: bwa mem single-end
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command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_single_end -c tests/config/nextflow.config
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tags:
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- bwa
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- bwa/mem
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files:
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- path: ./output/bwa/test.bam
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md5sum: 9165508bf914baee0e6347711aa7b23a
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- path: ./output/index/bwa/genome.bwt
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md5sum: 0469c30a1e239dd08f68afe66fde99da
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- path: ./output/index/bwa/genome.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/index/bwa/genome.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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- path: ./output/index/bwa/genome.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/index/bwa/genome.sa
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md5sum: ab3952cabf026b48cd3eb5bccbb636d1
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- name: bwa mem paired-end
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command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
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tags:
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- bwa
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- bwa/mem
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files:
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- path: ./output/bwa/test.bam
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md5sum: 670a53bddee62d6bd14ed7adaf103e7c
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- path: ./output/index/bwa/genome.bwt
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md5sum: 0469c30a1e239dd08f68afe66fde99da
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- path: ./output/index/bwa/genome.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/index/bwa/genome.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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- path: ./output/index/bwa/genome.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/index/bwa/genome.sa
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md5sum: ab3952cabf026b48cd3eb5bccbb636d1
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