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https://github.com/MillironX/nf-core_modules.git
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043a7d1e3c
* remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
16 lines
596 B
YAML
16 lines
596 B
YAML
- name: cutadapt single-end
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command: nextflow run ./tests/software/cutadapt -entry test_cutadapt_single_end -c tests/config/nextflow.config
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tags:
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- cutadapt
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files:
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- path: ./output/cutadapt/test.cutadapt.log
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- path: ./output/cutadapt/test.trim.fastq.gz
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- name: cutadapt paired-end
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command: nextflow run ./tests/software/cutadapt -entry test_cutadapt_paired_end -c tests/config/nextflow.config
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tags:
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- cutadapt
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files:
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- path: ./output/cutadapt/test.cutadapt.log
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- path: ./output/cutadapt/test_1.trim.fastq.gz
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- path: ./output/cutadapt/test_2.trim.fastq.gz
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