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https://github.com/MillironX/nf-core_modules.git
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043a7d1e3c
* remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths
17 lines
610 B
YAML
17 lines
610 B
YAML
- name: fastqc single-end
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command: nextflow run ./tests/software/fastqc/ -entry test_fastqc_single_end -c tests/config/nextflow.config
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tags:
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- fastqc
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files:
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- path: ./output/fastqc/test_fastqc.html
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- path: ./output/fastqc/test_fastqc.zip
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- name: fastqc paired-end
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command: nextflow run ./tests/software/fastqc/ -entry test_fastqc_paired_end -c tests/config/nextflow.config
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tags:
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- fastqc
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files:
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- path: ./output/fastqc/test_1_fastqc.html
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- path: ./output/fastqc/test_2_fastqc.html
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- path: ./output/fastqc/test_2_fastqc.zip
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- path: ./output/fastqc/test_1_fastqc.zip
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