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https://github.com/MillironX/nf-core_modules.git
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acb1a12a56
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint
44 lines
1.5 KiB
Text
44 lines
1.5 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SPADES } from '../../../software/spades/main.nf' addParams( spades_hmm: false ,options: [:] )
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workflow test_spades_single_end {
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input = [ [ id:'test', single_end:true ], // meta map
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[ file("${launchDir}/tests/data/generic/fastq/test_R1.fastq.gz", checkIfExists: true) ]
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]
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coronaspades = false
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SPADES ( input, [], coronaspades )
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}
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workflow test_spades_paired_end {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file("${launchDir}/tests/data/generic/fastq/test_R1.fastq.gz", checkIfExists: true),
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file("${launchDir}/tests/data/generic/fastq/test_R2.fastq.gz", checkIfExists: true) ]
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]
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coronaspades = false
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SPADES ( input, [], coronaspades )
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}
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workflow test_coronospades_single_end {
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input = [ [ id:'test', single_end:true ], // meta map
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[ file("${launchDir}/tests/data/genomics/sarscov2/illumina/fastq/test_1.fastq.gz", checkIfExists: true) ]
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]
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coronaspades = true
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SPADES ( input, [], coronaspades )
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}
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workflow test_coronospades_paired_end {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file("${launchDir}/tests/data/genomics/sarscov2/illumina/fastq/test_1.fastq.gz", checkIfExists: true),
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file("${launchDir}/tests/data/genomics/sarscov2/illumina/fastq/test_2.fastq.gz", checkIfExists: true) ]
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]
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coronaspades = true
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SPADES ( input, [], coronaspades )
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}
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