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* deepbgc_download first version * with test.yml * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Apply suggestions from code review * delete trailing whitespace main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
31 lines
881 B
Text
31 lines
881 B
Text
process DEEPBGC_DOWNLOAD {
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tag "download"
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label 'process_low'
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conda (params.enable_conda ? "bioconda::deepbgc=0.1.30" : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/deepbgc:0.1.30--pyhb7b1952_1':
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'quay.io/biocontainers/deepbgc:0.1.30--pyhb7b1952_1' }"
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output:
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path "deepbgc_db" , emit: db
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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script:
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def args = task.ext.args ?: ''
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"""
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export DEEPBGC_DOWNLOADS_DIR='./deepbgc_db'
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deepbgc \\
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download
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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deepbgc: \$(echo \$(deepbgc info 2>&1 /dev/null/ | grep 'version' | cut -d " " -f3) )
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END_VERSIONS
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"""
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}
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