mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
4efa8da5c5
* controlfreec significance * move freec files to own subfolder * Fix meta.yml naming * Fix meta.yml naming * Fix linting * Forgot to refactor * forgot more refactoring * Too much refactoring on output paths * Too little refactoring here * update checksum
26 lines
828 B
Text
26 lines
828 B
Text
process {
|
|
|
|
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
|
|
|
|
withName:CONTROLFREEC_FREEC{
|
|
ext.args = { [
|
|
"sample":[
|
|
inputformat: 'pileup',
|
|
mateorientation: 'FR'
|
|
],
|
|
"general" :[
|
|
bedgraphoutput: "TRUE",
|
|
noisydata: "TRUE",
|
|
minexpectedgc: "0",
|
|
readcountthreshold: "1",
|
|
sex: meta.sex,
|
|
window: "10",
|
|
],
|
|
"control":[
|
|
inputformat: "pileup",
|
|
mateorientation: "FR"
|
|
]
|
|
]
|
|
}
|
|
}
|
|
}
|