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f5d5926516
* Match target bed to input files * Intervals in getpileupsumamries * more interval updates * change targets in strelka * remove leftover channel * fix checksums * add new test vcfs * add new test vcfs * Update modules/freebayes/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
21 lines
1,005 B
YAML
21 lines
1,005 B
YAML
- name: strelka somatic test_strelka_somatic
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command: nextflow run ./tests/modules/strelka/somatic -entry test_strelka_somatic -c ./tests/config/nextflow.config -c ./tests/modules/strelka/somatic/nextflow.config
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tags:
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- strelka
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- strelka/somatic
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files:
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- path: output/strelka/test.somatic_indels.vcf.gz
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- path: output/strelka/test.somatic_indels.vcf.gz.tbi
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- path: output/strelka/test.somatic_snvs.vcf.gz
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- path: output/strelka/test.somatic_snvs.vcf.gz.tbi
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- name: strelka somatic test_strelka_best_practices_somatic
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command: nextflow run ./tests/modules/strelka/somatic -entry test_strelka_best_practices_somatic -c ./tests/config/nextflow.config -c ./tests/modules/strelka/somatic/nextflow.config
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tags:
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- strelka
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- strelka/somatic
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files:
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- path: output/strelka/test.somatic_indels.vcf.gz
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- path: output/strelka/test.somatic_indels.vcf.gz.tbi
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- path: output/strelka/test.somatic_snvs.vcf.gz
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- path: output/strelka/test.somatic_snvs.vcf.gz.tbi
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