millironx/nf-core_modules
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nf-core_modules/software/gatk4
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Kevin Menden 043a7d1e3c
remove deprecated test tags (#440) 
* remove deprecated test tags

* fix bowtie, gatk4/applybsqr

* fix gatk4 baserecalibrator

* fixed shovill

* fixed yara/mapper

* fixed kallistobustools/ref paths
2021-04-13 18:03:09 +01:00
..
applybqsr remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
baserecalibrator remove deprecated test tags (#440) 2021-04-13 18:03:09 +01:00
bedtointervallist Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
createsequencedictionary Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
fastqtosam Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
haplotypecaller Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
markduplicates Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
mergebamalignment Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
mergevcfs Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
revertsam Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
samtofastq Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
splitncigarreads Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00
variantfiltration Update functions.nf to be more flexible for publishing by meta keys (#423) 2021-04-09 17:23:56 +01:00