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20 lines
436 B
Text
20 lines
436 B
Text
process fastqc {
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tag "FastQC - $sample_id"
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publishDir "${params.outdir}/fastqc", mode: 'copy',
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saveAs: {filename -> filename.indexOf(".zip") > 0 ? "zips/$filename" : "$filename"}
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container 'quay.io/biocontainers/fastqc:0.11.8--2'
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input:
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tuple sample_id, path(reads)
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output:
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path "*_fastqc.{zip,html}"
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script:
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"""
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fastqc -q $reads
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fastqc --version &> fastqc.version.txt
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"""
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}
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