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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
30 lines
1 KiB
YAML
30 lines
1 KiB
YAML
name: gatk4_createsequencedictionary
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description: Creates a sequence dictionary for a reference sequence
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keywords:
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- dictionary
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- fasta
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tools:
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- gatk:
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description: |
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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools
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with a primary focus on variant discovery and genotyping. Its powerful processing engine
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and high-performance computing features make it capable of taking on projects of any size.
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homepage: https://gatk.broadinstitute.org/hc/en-us
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documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
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doi: 10.1158/1538-7445.AM2017-3590
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input:
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- fasta:
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type: file
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description: Input fasta file
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pattern: "*.{fasta,fa}"
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output:
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- dict:
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type: file
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description: gatk dictionary file
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pattern: "*.{dict}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@maxulysse"
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