mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
55 lines
1.6 KiB
YAML
55 lines
1.6 KiB
YAML
name: rseqc_innerdistance
|
|
description: Calculate inner distance between read pairs.
|
|
keywords:
|
|
- fragment_size
|
|
- inner_distance
|
|
tools:
|
|
- rseqc:
|
|
description: |
|
|
RSeQC package provides a number of useful modules that can comprehensively evaluate
|
|
high throughput sequence data especially RNA-seq data.
|
|
homepage: http://rseqc.sourceforge.net/
|
|
documentation: http://rseqc.sourceforge.net/
|
|
doi: 10.1093/bioinformatics/bts356
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: the alignment in bam format
|
|
pattern: "*.{bam}"
|
|
- bed:
|
|
type: file
|
|
description: a bed file for the reference gene model
|
|
pattern: "*.{bed}"
|
|
output:
|
|
- distance:
|
|
type: file
|
|
description: the inner distances
|
|
pattern: "*.inner_distance.txt"
|
|
- freq:
|
|
type: file
|
|
description: frequencies of different insert sizes
|
|
pattern: "*.inner_distance_freq.txt"
|
|
- mean:
|
|
type: file
|
|
description: mean/median values of inner distances
|
|
pattern: "*.inner_distance_mean.txt"
|
|
- pdf:
|
|
type: file
|
|
description: distribution plot of inner distances
|
|
pattern: "*.inner_distance_plot.pdf"
|
|
- rscript:
|
|
type: file
|
|
description: script to reproduce the plot
|
|
pattern: "*.inner_distance_plot.R"
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
authors:
|
|
- "@drpatelh"
|
|
- "@kevinmenden"
|