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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
35 lines
883 B
YAML
35 lines
883 B
YAML
name: salmon_index
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description: Create index for salmon
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keywords:
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- index
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- fasta
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- genome
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- reference
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tools:
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- salmon:
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description: |
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Salmon is a tool for wicked-fast transcript quantification from RNA-seq data
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homepage: https://salmon.readthedocs.io/en/latest/salmon.html
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manual: https://salmon.readthedocs.io/en/latest/salmon.html
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doi: 10.1038/nmeth.4197
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input:
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- genome_fasta:
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type: file
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description: Fasta file of the reference genome
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- transcriptome_fasta:
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type: file
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description: Fasta file of the reference transcriptome
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output:
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- index:
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type: directory
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description: Folder containing the star index files
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pattern: "salmon"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@kevinmenden"
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- "@drpatelh"
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