mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 16:12:04 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
38 lines
1.3 KiB
YAML
38 lines
1.3 KiB
YAML
name: sequenzautils_gcwiggle
|
|
description: Sequenza-utils gc_wiggle computes the GC percentage across the sequences, and returns a file in the UCSC wiggle format, given a fasta file and a window size.
|
|
keywords:
|
|
- gc_wiggle
|
|
tools:
|
|
- sequenzautils:
|
|
description: Sequenza-utils provides 3 main command line programs to transform common NGS file format - such as FASTA, BAM - to input files for the Sequenza R package. The program -gc_wiggle- takes fasta file as an input, computes GC percentage across the sequences and returns a file in the UCSC wiggle format.
|
|
homepage: https://sequenza-utils.readthedocs.io/en/latest/index.html
|
|
documentation: https://sequenza-utils.readthedocs.io/en/latest/index.html
|
|
doi: 10.1093/annonc/mdu479
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: FASTA file
|
|
pattern: "*.{fasta}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- version:
|
|
type: file
|
|
description: File containing software version
|
|
pattern: "*.{version.txt}"
|
|
- wig:
|
|
type: file
|
|
description: GC Wiggle track file
|
|
pattern: "*.{wig.gz}"
|
|
|
|
authors:
|
|
- "@kaurravneet4123"
|