GCJMackenzie 071b1d50a8 Add gatk somatic tumour calling subworkflow (#1064) ... * initial commit to set up new branch * save changes to checkout * workflow working, still needs test.yml and meta.yml, also fix versions file * subworkflow finished * Update pytest_subworkflows.yml * Update pytest_subworkflows.yml * Update pytest_subworkflows.yml * fix config subworkflow name * Update main.nf * Update pytest_subworkflows.yml * fixed md5sum issue likely caused by gatk version update * tumour changed to tumor * old dir deleted * Comments added to explain use of placeholders '[]' * updated index names, input channel renamed to input * Apply suggestions from code review * updated to perform new subworkflow testing Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>		2021-11-17 11:07:17 +01:00
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nf-core	Add gatk somatic tumour calling subworkflow (#1064)	2021-11-17 11:07:17 +01:00