nf-core_modules/modules/bedtools/makewindows/meta.yml
Kevin Brick 0732028e15
Add bedtools/makewindows module (#658)
* Add bedtools/makewindows module
2021-09-07 14:36:06 -04:00

43 lines
1.3 KiB
YAML

name: bedtools_makewindows
description: Makes adjacent or sliding windows across a genome or BED file.
keywords:
- bed
- windows
tools:
- bedtools:
description: A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
homepage: https://bedtools.readthedocs.io
documentation: https://bedtools.readthedocs.io/en/latest/content/tools/makewindows.html
tool_dev_url: None
doi: "10.1093/bioinformatics/btq033"
licence: ['GPL v2']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- regions:
type: file
description: BED file OR Genome details file (<chromName><TAB><chromSize>)
pattern: "*.{bed,fai,tab}"
- use_bed:
type: boolean
description: true = input is a BED file; false = input is a genome details file
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- tab:
type: file
description: Windows TAB file (BED or BED-like format)
pattern: "*.tab"
authors:
- "@kevbrick"