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073bbf1b26
* add staphopia-sccmec module * add additional test * change output name * Update main.nf * Update test.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
44 lines
1.1 KiB
YAML
44 lines
1.1 KiB
YAML
name: staphopiasccmec
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description: Predicts Staphylococcus aureus SCCmec type based on primers.
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keywords:
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- amr
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- fasta
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- sccmec
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tools:
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- staphopiasccmec:
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description: Predicts Staphylococcus aureus SCCmec type based on primers.
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homepage: https://staphopia.emory.edu
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documentation: https://github.com/staphopia/staphopia-sccmec
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tool_dev_url: https://github.com/staphopia/staphopia-sccmec
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doi: https://doi.org/10.7717/peerj.5261
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- fasta:
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type: file
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description: FASTA assembly file
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pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- tsv:
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type: file
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description: Tab-delimited results
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pattern: "*.{tsv}"
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authors:
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- "@rpetit3"
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