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abacas
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
adapterremoval
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
allelecounter
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
artic
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
bandage /image
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
bbmap /bbduk
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
bcftools
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
bedtools
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
bismark
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
blast
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
bowtie
Fix number of cpus for modules with piped tools ( #499 )
2021-05-18 09:52:00 +02:00
bowtie2
Fix number of cpus for modules with piped tools ( #499 )
2021-05-18 09:52:00 +02:00
bwa
Fix number of cpus for modules with piped tools ( #499 )
2021-05-18 09:52:00 +02:00
bwamem2
Fix number of cpus for modules with piped tools ( #499 )
2021-05-18 09:52:00 +02:00
bwameth
Fix number of cpus for modules with piped tools ( #499 )
2021-05-18 09:52:00 +02:00
cat /fastq
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
cnvkit
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
cutadapt
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
deeptools
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
dshbio
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
fastp
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
fastqc
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
fasttree
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
fgbio
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
flash
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
gatk4
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
genmap
add genmap/mappability ( #509 )
2021-05-25 22:12:10 +01:00
gffread
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
graphmap2
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
gubbins
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
gunzip
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
hisat2
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
hmmer /hmmalign
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
homer /annotatepeaks
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
iqtree
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
ivar
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
kallisto /index
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
kallistobustools
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
kraken2 /run
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
last
New last/mafconvert module to convert MAF alignments. ( #527 )
2021-06-09 08:38:57 +02:00
lib
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
macs2 /callpeak
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
mash /sketch
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
methyldackel
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
minia
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
minimap2
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
mosdepth
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
msisensor
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
multiqc
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
nanolyse
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
nanoplot
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
nextclade
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
optitype
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
pairix
add software/pairix ( #508 )
2021-05-25 21:22:57 +01:00
pairtools
Pairtools sort ( #524 )
2021-05-27 18:25:23 +01:00
pangolin
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
phantompeakqualtools
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
picard
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
plasmidid
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
preseq /lcextrap
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
prodigal
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
prokka
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
pycoqc
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
qcat
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
qualimap
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
quast
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
rapidnj
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
rasusa
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
raxmlng
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
rsem
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
rseqc
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
salmon
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
samtools
Update samtools from 1.10 to 1.12 ( #530 )
2021-06-07 13:07:32 +02:00
seacr /callpeak
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
seqkit /split2
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
seqtk /sample
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
sequenzautils
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
seqwish /induce
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
shovill
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
snpsites
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
sortmerna
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
spades
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
star
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
strelka /germline
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
stringtie
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
subread /featurecounts
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
tabix
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
tiddit /sv
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
trimgalore
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
ucsc
add additional ucsc tools ( #506 )
2021-05-20 15:39:33 -04:00
umitools
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
unicycler
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
untar
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
vcftools
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00
yara
Update comments with new style ( #497 )
2021-05-12 14:56:46 +01:00