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f7ebc2fc48
* New last/dotplot module for pairwise similarity plots The `last-dotplot` tool takes a pairwise alignment in [MAF](http://genome.ucsc.edu/FAQ/FAQformat.html#format5) format, possibly compressed with gzip, or in a tabular format produced by the `maf-convert` tool, and produces a similarity dot-plot of the two sequences in one of the graphical formats supported by the Python Imaging Library. A the tool guesses the output format by the file extension of the file, which is constructed by the module at run time, I have used the `args2` option to convey this information to the module. This new module is part of the work described in Issue #464. During this development, we fix the version of LAST to 1219 to ensure consistency (hence please ignore lint's version warning). * Update the functions.nf file to the dev branch. https://raw.githubusercontent.com/nf-core/tools/dev/nf_core/module-template/software/functions.nf
17 lines
559 B
YAML
17 lines
559 B
YAML
- name: last dotplot test_last_dotplot
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command: nextflow run tests/software/last/dotplot -entry test_last_dotplot -c tests/config/nextflow.config
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tags:
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- last
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- last/dotplot
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files:
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- path: output/last/test.png
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md5sum: 6189aaf96f522cdb664869724997bbcd
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- name: last dotplot test_last_dotplot_gif
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command: nextflow run tests/software/last/dotplot -entry test_last_dotplot_gif -c tests/config/nextflow.config
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tags:
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- last
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- last/dotplot
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files:
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- path: output/last/test.gif
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md5sum: 1dd2c85fb5495ca0e85c4ef1dcfce220
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