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e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
27 lines
758 B
Text
27 lines
758 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PRESEQ_LCEXTRAP } from '../../../../modules/preseq/lcextrap/main.nf' addParams( options: [:] )
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//
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// Test with single-end data
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//
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workflow test_preseq_single_end {
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input = [ [ id:'test', single_end:true ], // meta map
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[ file('https://github.com/smithlabcode/preseq/raw/master/data/SRR1003759_5M_subset.mr', checkIfExists: true) ]
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]
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PRESEQ_LCEXTRAP ( input )
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}
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//
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// Test with paired-end data
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//
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workflow test_preseq_paired_end {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file('https://github.com/smithlabcode/preseq/raw/master/data/SRR1003759_5M_subset.mr', checkIfExists: true) ]
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]
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PRESEQ_LCEXTRAP ( input )
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}
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