mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
c736d26b7e
* Added missing "ucsc" tags (as per the convention) * Added support for the -as input file * Added a test
50 lines
1.1 KiB
YAML
Executable file
50 lines
1.1 KiB
YAML
Executable file
name: ucsc_bedtobigbed
|
|
description: Convert file from bed to bigBed format
|
|
keywords:
|
|
- bed
|
|
- bigbed
|
|
tools:
|
|
- ucsc:
|
|
description: Convert file from bed to bigBed format
|
|
homepage: None
|
|
documentation: None
|
|
tool_dev_url: None
|
|
doi: ""
|
|
licence: ["varies; see http://genome.ucsc.edu/license"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bed:
|
|
type: file
|
|
description: bed file
|
|
pattern: "*.{bed}"
|
|
- sizes:
|
|
type: file
|
|
description: chromosome sizes file
|
|
pattern: "*.{sizes}"
|
|
- autosql:
|
|
type: file
|
|
description: autoSql file to describe the columns of the BED file
|
|
pattern: "*.{as}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- bigbed:
|
|
type: file
|
|
description: bigBed file
|
|
pattern: "*.{bigBed}"
|
|
|
|
authors:
|
|
- "@drpatelh"
|