mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
9ae34a01d1
* Fix typo * Add stub runs for testing input without matched normals * Add missing -stub-run * remove empty file checksum tests and change workflow names * test controlfreec naming * fix output file names * fix output file names * fix output file names * fix conda and container path difference for R scripts * update tar version to work with conda * fix version number in docker * try to fix path to script, pretty sure it won't work * try new ways to set path with wildcard * try which * add which but with escape * remove comment
22 lines
958 B
YAML
22 lines
958 B
YAML
- name: controlfreec makegraph test_controlfreec_makegraph
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command: nextflow run tests/modules/controlfreec/makegraph -entry test_controlfreec_makegraph -c tests/config/nextflow.config
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tags:
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- controlfreec
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- controlfreec/makegraph
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files:
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- path: output/controlfreec/test_BAF.png
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md5sum: f9d977839e09c7e2472d970bd4aa834c
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- path: output/controlfreec/test_ratio.log2.png
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md5sum: b3c7916b1b4951a0cc3da20d8e9e0262
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- path: output/controlfreec/test_ratio.png
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md5sum: 1435b29536b3b1555b4c423f8f4fb000
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- name: controlfreec makegraph test_controlfreec_makegraph_single
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command: nextflow run tests/modules/controlfreec/makegraph -entry test_controlfreec_makegraph_single -c tests/config/nextflow.config -stub-run
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tags:
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- controlfreec
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- controlfreec/makegraph
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files:
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- path: output/controlfreec/test_BAF.png
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- path: output/controlfreec/test_ratio.log2.png
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- path: output/controlfreec/test_ratio.png
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