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f9d25aad7f
* fix: remove left-over unnecessary code * Update main.nf * Update hmmer/hmmalign command to natively accept gzipped input * Making @drpatelh happy Co-authored-by: Moritz E. Beber <midnighter@posteo.net> Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
46 lines
1.2 KiB
YAML
46 lines
1.2 KiB
YAML
name: hmmer_hmmalign
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description: hmmalign from the HMMER suite aligns a number of sequences to an HMM profile
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keywords:
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- alignment
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tools:
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- hmmer:
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description: Biosequence analysis using profile hidden Markov models
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homepage: http://hmmer.org/
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documentation: http://hmmer.org/documentation.html
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tool_dev_url: None
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doi: "http://dx.doi.org/10.1371/journal.pcbi.1002195"
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licence: ["BSD-3-Clause"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test' ]
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- fasta:
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type: file
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description: Amino acid or nucleotide gzipped compressed fasta file
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pattern: "*.{fna.gz,faa.gz,fasta.gz,fa.gz}"
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- hmm:
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type: file
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description: A gzipped HMM file
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pattern: "*.hmm.gz"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- sthlm:
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type: file
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description: Multiple alignment in gzipped Stockholm format
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pattern: "*.sthlm.gz"
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authors:
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- "@erikrikarddaniel"
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- "@jfy133"
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