nf-core_modules/tests/modules/gatk4/samtofastq/test.yml
2022-05-02 11:59:08 +02:00

31 lines
1.3 KiB
YAML

- name: gatk4 samtofastq test_gatk4_samtofastq_single_end
command: nextflow run ./tests/modules/gatk4/samtofastq -entry test_gatk4_samtofastq_single_end -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/samtofastq/nextflow.config
tags:
- gatk4
- gatk4/samtofastq
files:
- path: output/gatk4/test.fastq.gz
md5sum: 50ace41d4c24467f24f8b929540a7797
- path: output/gatk4/versions.yml
- name: gatk4 samtofastq test_gatk4_samtofastq_paired_end
command: nextflow run ./tests/modules/gatk4/samtofastq -entry test_gatk4_samtofastq_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/samtofastq/nextflow.config
tags:
- gatk4
- gatk4/samtofastq
files:
- path: output/gatk4/test_1.fastq.gz
md5sum: cfea607c9d75fd9ea9704780ad3a499c
- path: output/gatk4/test_2.fastq.gz
md5sum: 613bf64c023609e1c62ad6ce9e4be8d7
- path: output/gatk4/versions.yml
- name: gatk4 samtofastq test_gatk4_samtofastq_paired_end_stubs
command: nextflow run ./tests/modules/gatk4/samtofastq -entry test_gatk4_samtofastq_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/samtofastq/nextflow.config -stub-run
tags:
- gatk4
- gatk4/samtofastq
files:
- path: output/gatk4/test_1.fastq.gz
- path: output/gatk4/test_2.fastq.gz
- path: output/gatk4/versions.yml