mirror of
https://github.com/MillironX/nf-core_modules.git
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37c6d4a1a1
* first commit
* single taxon input
* added .tsv output
* input: single taxon or file with taxon identifiers
* updated input and output
* removed wrong tool description
* added tests
* ext.args = '-l -b'
* fixed wrong input names
* updated test file
* Update modules/goat/taxonsearch/main.nf
simple version output
Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
* removed 'NO_FILE' from input definition
* added ! in if statement
* optional input: empty list
* successful updated test
* added test with file
* remove blank spaces in include {}
* added test with taxa file
Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
44 lines
938 B
Text
44 lines
938 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GOAT_TAXONSEARCH } from '../../../../modules/goat/taxonsearch/main.nf'
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//
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// Test with genus name (Canis)
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//
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workflow test_goat_taxonsearch_genus_name {
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input = [
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[ id:'test_genus_name' ], // meta map
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taxon = 'Canis',
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[]
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]
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GOAT_TAXONSEARCH ( input )
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}
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//
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// Test with genus (Drosophila, fruit flies) using NCBI taxonomy ID
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//
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workflow test_goat_taxonsearch_genus_id {
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input = [
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[ id:'test_genus_id' ], // meta map
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taxon = '7215',
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[]
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]
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GOAT_TAXONSEARCH ( input )
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}
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//
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// Test with multiple species from a taxa file
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//
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workflow test_goat_taxonsearch_species {
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input = [
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[ id:'test_species' ], // meta map
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taxon = '',
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file('https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/delete_me/goat_taxonsearch/taxonomy_ids.txt', checkIfExists: true)
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]
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GOAT_TAXONSEARCH ( input )
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}
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