Kevin Menden a90332906b add mergebamalignment (#259) ... * add mergebamalignment * fix test.yml * update to latest gatk4 version * Update software/gatk4/mergebamalignment/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update tests/data/README.md Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gatk4/mergebamalignment/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update software/gatk4/mergebamalignment/meta.yml * fixed unmapped/unaligned Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>		2021-03-17 15:56:56 +01:00
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bedtointervallist	Converge test data usage (#249)	2021-03-04 10:10:57 +00:00
createsequencedictionary	Rename gatk/createsequencedictionary -> gatk4/createsequencedictionary (#260)	2021-03-08 14:45:46 +01:00
mergebamalignment	add mergebamalignment (#259)	2021-03-17 15:56:56 +01:00
mergevcfs	Exchange VCF data by sarscov2 data (#261)	2021-03-09 10:04:08 +01:00
revertsam	Converge test data usage (#249)	2021-03-04 10:10:57 +00:00
samtofastq	Converge test data usage (#249)	2021-03-04 10:10:57 +00:00
splitncigarreads	Converge test data usage (#249)	2021-03-04 10:10:57 +00:00
variantfiltration	added gatk4 variantfiltration (#265)	2021-03-17 09:42:35 +01:00