mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
0bdd589163
* added module endorspy and test * added endorspy * Fixed spaces and remove unnecessary lines from test * added extra new line to test.yml * added a prefix to to avoid name collision * Update modules/endorspy/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/endorspy/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Apply suggestions from code review * Update modules/endorspy/main.nf * Apply suggestions from code review Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
48 lines
1.5 KiB
YAML
48 lines
1.5 KiB
YAML
name: "endorspy"
|
|
description: endorS.py calculates endogenous DNA from samtools flagstat files and print to screen
|
|
keywords:
|
|
- endogenous DNA
|
|
- ancient DNA
|
|
- percent on target
|
|
- statistics
|
|
tools:
|
|
- "endorspy":
|
|
description: "endorS.py calculates endogenous DNA from samtools flagstat files and print to screen"
|
|
homepage: "https://github.com/aidaanva/endorS.py"
|
|
documentation: "https://github.com/aidaanva/endorS.py"
|
|
tool_dev_url: "https://github.com/aidaanva/endorS.py"
|
|
doi: "10.7717/peerj.10947"
|
|
licence: "['GPL v3']"
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- stats:
|
|
type: file
|
|
description: output of samtools flagstat in a text file
|
|
- stats_optional:
|
|
type: file
|
|
description: output of a second samtools flagstat run in a text file. If two files are supplied,
|
|
the mapped reads of the second file is divided by the total reads in the first, since it
|
|
assumes that the <samplefile.stats> are related to the same sample. Useful after BAM filtering.
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- json:
|
|
type: file
|
|
description: file with the endogenous DNA calculation tailored for multiQC
|
|
pattern: "*_mqc.json"
|
|
|
|
authors:
|
|
- "@aidaanva"
|