Matthias De Smet 36049bf544 Fgbio/fastqtobam (#1980) ... * fix samtools stats thread usage * fix samtools stats thread usage (#1975) * fix samtools stats thread usage * fix checksums * Fix/samtools flagstat (#1979) * fix samtools stats thread usage * flagstat: fix threads * Update busco to v5.4.3 and tar small files (#1970) * Update busco to v5.4.3 and tar small files * Fix file contain strings * Swap md5sums to contains for variable files * Simplify and generalize module * add test.yml * Update modules/fgbio/fastqtobam/meta.yml Co-authored-by: Moritz E. Beber <midnighter@posteo.net> * add support + tests for cram output * more tweaks * update test.yml * prettier * try to fix tests * fix tests * prettier * drop checksum for cram Co-authored-by: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se> Co-authored-by: Moritz E. Beber <midnighter@posteo.net>		2022-09-05 11:57:55 +02:00
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callmolecularconsensusreads	Fgbio tmpdir modification (#1890)	2022-07-15 11:20:58 +02:00
fastqtobam	Fgbio/fastqtobam (#1980)	2022-09-05 11:57:55 +02:00
groupreadsbyumi	Fgbio tmpdir modification (#1890)	2022-07-15 11:20:58 +02:00
sortbam	Fgbio tmpdir modification (#1890)	2022-07-15 11:20:58 +02:00